Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
HBA_target.cwl
|
https://git.astron.nl/RD/LINC.git
Path: workflows/HBA_target.cwl Branch/Commit ID: 2ea3b1a87fc3b43d5c91eed266a2d67037b8762c |
|
|
|
allele-alignreads-se-pe.cwl
Workflow maps FASTQ files from `fastq_files` input into reference genome `reference_star_indices_folder` and insilico generated `insilico_star_indices_folder` genome (concatenated genome for both `strain1` and `strain2` strains). For both genomes STAR is run with `outFilterMultimapNmax` parameter set to 1 to discard all of the multimapped reads. For insilico genome SAM file is generated. Then it's splitted into two SAM files based on strain names and then sorted by coordinates into the BAM format. For reference genome output BAM file from STAR slignment is also coordinate sorted. |
https://github.com/Barski-lab/workflows.git
Path: subworkflows/allele-alignreads-se-pe.cwl Branch/Commit ID: 744117c1332359de1ed0d2c3c4f314ffcb6797d3 |
|
|
|
revsort.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/revsort.cwl Branch/Commit ID: 639229b1159cf484e70e52da10194561b3fad719 |
|
|
|
Hello World
Outputs a message using echo |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/hello-workflow.cwl Branch/Commit ID: baefdcb58fcc76e3378cf705fc6a3e69ef35bb47 |
|
|
|
scatterfail.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatterfail.cwl Branch/Commit ID: d5f7fa162611243f0c66dd3e933c16a4964a09ca |
|
|
|
bacterial_screening.cwl
|
https://github.com/ncbi/pgap.git
Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: 7b21dc40840852f3942c31b9c472346ea3f9a3ca |
|
|
|
group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/Barski-lab/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: f371e588940e65889febaea9c35bc96c9e1558c3 |
|
|
|
gather AML trio outputs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/aml_trio_cle_gathered.cwl Branch/Commit ID: 6bfb64375e7ebb6eb40f463ede86d8deccdb9eff |
|
|
|
Unaligned BAM to BQSR and VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 88f1e02b261bf9ce882eba306b6245c64328632b |
|
|
|
Whole genome alignment and somatic variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 6bfb64375e7ebb6eb40f463ede86d8deccdb9eff |
