Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Seed Protein Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_seqids.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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env-wf2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/env-wf2.cwl Branch/Commit ID: 17268d1493d9e558113b2c35c0be6b3fb961b2a3 |
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Unaligned bam to sorted, markduped bam
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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kfdrc_bwamem_subwf.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: workflows/dev/ultra-opt/workflows/kfdrc_bwamem_subwf.cwl Branch/Commit ID: b7dd9171073f4a1113a1a9cc76e185749949331c |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 26806d99f8e2a241715fd081e712d4e3763db5b8 |
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merge_filter.cwl
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https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflow_modules/merge_filter.cwl Branch/Commit ID: 6a2df36b7c019ecb91bd1b7ed9eb7c62ccbe112d |
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analysis-workflow.cwl
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https://github.com/mskcc/pluto-cwl.git
Path: cwl/analysis-workflow.cwl Branch/Commit ID: dbff0c5ae06a8b21ec70bc8279f32bce151cbfc2 |
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trim-chipseq-pe.cwl
Runs ChIP-Seq BioWardrobe basic analysis with paired-end input data files. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-chipseq-pe.cwl Branch/Commit ID: b8e28a017f7b1a2900ec0fd3b3549f123f0c91b4 |
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samples_fillout_index_workflow.cwl
Wrapper to run bam indexing on all bams before submitting for samples fillout Also includes steps to pre-filter some maf input files |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/samples_fillout_index_workflow.cwl Branch/Commit ID: 2e1a01a788126f2901ffecc92a48fcbcb81776e1 |
