Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Creates FASTA file from BED coordinates
This workflow creates FASTA file from BED coordinates |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/fasta-from-bed.cwl Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61 |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_orf_hmms.cwl Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017 |
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Resize sentinel2ard collection
Resize sentinel2ard collection |
https://github.com/EO-DataHub/eodh-training.git
Path: cwl/resize-sentinel2ard.cwl Branch/Commit ID: dc9a1edc09cd09163d088ee8a09912b9c0c357e2 Packed ID: resize-sentinel2ard |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017 |
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Get Proteins
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https://github.com/ncbi/pgap.git
Path: wf_bacterial_prot_src.cwl Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017 |
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checkm
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https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017 |
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kfdrc_annoFuse_wf.cwl
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https://github.com/kids-first/kf-rnaseq-workflow.git
Path: workflow/kfdrc_annoFuse_wf.cwl Branch/Commit ID: 5d9dd57011df312e3ecdea4e64d71e24ed38ac12 |
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spurious_annot
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017 |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017 |
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Non-Coding Bacterial Genes
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017 |
