Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_orf_hmms.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 192b813eed8c0d368e69057cb39415175dd15128 |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: 026bba9511561246ad65458f0f55c88cead26fbd |
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group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/Barski-lab/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: c82a2e766abba032f0bbe2aa76e0176e69064569 |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 5d5c4b4ed6d6de42eda2c68aefcf738c201517fb |
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conflict.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/conflict.cwl Branch/Commit ID: ca7f7687b39611c295dc9d21c542214f2b462093 Packed ID: main |
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Run genomic CMsearch
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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Bacterial Annotation, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_2nd_pass.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc |
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stdout-wf_v1_2.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/stdout-wf_v1_2.cwl Branch/Commit ID: 513bf79c9e3ba98306006a87165de18bac7c04ee |
