Explore Workflows

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines6-wf.cwl

Branch/Commit ID: 19f2cb6e21db8624155c7e253b89c57df536fcc1

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/inpdir_update_wf.cwl

Branch/Commit ID: 3867f2fa4c204bc99dc664bb3f0ba71e360e142e

https://github.com/ncbi/pgap.git

Path: task_types/tt_bact_get_kmer_reference.cwl

Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/env-wf1.cwl

Branch/Commit ID: 979083396fee912fca8ef778174216d317338a00

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_target/selfcal_targ_hba.cwl

Branch/Commit ID: 96f1caf46ca4859e7cb49919dcb13bf53abf4393

https://git.astron.nl/RD/LINC.git

Path: workflows/LBA_target.cwl

Branch/Commit ID: f4d9e23e09d2ab8dc266e3d9e164709e5c0f2a13

This workflow execute peak caller and QC from ChIP-Seq. For TF 1. Do not use broad, call-summits, broad-cutoff. 2. nomodel = True For Histones (H3K27me3, H3K9me3, H3K36me3): 1. Use broad, call-summits, broad-cutoff == 0.1. 2. nomodel = False For other histone marks: 1. Do not use broad, broad-cutoff. 2. nomodel = False 3. call-summits = True

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/peak_caller-with-control.cwl

Branch/Commit ID: 590ed6c9803ba670411c48650bc24deef7863925

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/steplevel-resreq.cwl

Branch/Commit ID: 19f2cb6e21db8624155c7e253b89c57df536fcc1

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_gathered.cwl

Branch/Commit ID: 6bfb64375e7ebb6eb40f463ede86d8deccdb9eff

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut.cwl

Branch/Commit ID: 17268d1493d9e558113b2c35c0be6b3fb961b2a3