Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph rRNA annotation workflow with scatter processing

\"This workflow performs rRNA annotation processing for multiple index files using scatter. It executes 4 processes: makeblastdb, blastn alignment, filtering, and rRNA removal for each rRNA index file. related CWL file: ./Tools/09_makeblastdb_rRNA.cwl ./Tools/10_blastn_rRNA_alignment.cwl ./Tools/10_blastn_rRNA_filter1.cwl ./Tools/10_blastn_rRNA_filter2.cwl ./Tools/10_blastn_rRNA_filter3.cwl\"

https://github.com/RyoMameda/workflow_cwl.git

Path: Worlkflow/blastn_rRNA_ssw.cwl

Branch/Commit ID: 53503a2f98c97e32a4c1f5f40f64d323def6842d
workflow graph scatter2.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatter2.cwl

Branch/Commit ID: ca7f7687b39611c295dc9d21c542214f2b462093
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: b174aec5dba5524367061a2c60472c318430f4f5
workflow graph count-lines10-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines10-wf.cwl

Branch/Commit ID: ad91c844b5adfef514c059af364e20afc935e598
workflow graph workflow1.cwl

https://github.com/process-project/PREFACTOR-XENON-CWL.git

Path: workflow1.cwl

Branch/Commit ID: dd356260083f88a10791bbc72d3df85c42186eef
workflow graph Bisulfite QC tools

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bisulfite_qc.cwl

Branch/Commit ID: 26806d99f8e2a241715fd081e712d4e3763db5b8
workflow graph gathered exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_gathered.cwl

Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07
workflow graph PGAP Pipeline, simple user input, PGAPX-134

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: 9144d08fa7f4e852498761481dceab477167fa65
workflow graph mut3.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut3.cwl

Branch/Commit ID: d64178072bc4fc9700ab80cdf90146890b96587e
workflow graph merge-bam-parallel

This workflow merge BAM files per condition in parallel

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/merge-bam-parallel.cwl

Branch/Commit ID: f37e1346f1d48fe9f2b9282e37997a2e3ffed7e2