Explore Workflows

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Graph Name Retrieved From View
workflow graph contig LCA

create LCA consistant across input contigs contigs order of precedence - rRNA, single copy gene, LCA of genes

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/contig-lca.workflow.cwl

Branch/Commit ID: 1b1bb901b849b32cbfc4cb58d736bb617d514319
workflow graph bacterial_screening.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/bacterial_screening.cwl

Branch/Commit ID: dcbbce152fbff2637f102471fb80318244492853
workflow graph alignment for nonhuman with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_wgs_nonhuman.cwl

Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/pan-organ-azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: 7113217ce7550464e5038f63a9145cce76b03e49
workflow graph assm_assm_blastn_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_assm_assm_blastn_wnode.cwl

Branch/Commit ID: 09774c78a965dd8f6c315597a53eef5998a3c1b6
workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-noscreen-fastq.workflow.cwl

Branch/Commit ID: d9cf22cd615542c94f7974e8bce4cf29b24d985f
workflow graph bact_get_kmer_reference

https://github.com/ncbi/pgap.git

Path: task_types/tt_bact_get_kmer_reference.cwl

Branch/Commit ID: 09774c78a965dd8f6c315597a53eef5998a3c1b6
workflow graph multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: ec8a7e87c40f0c98cb649d4ffa1fc52e44fffb27
workflow graph hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl

Branch/Commit ID: 09774c78a965dd8f6c315597a53eef5998a3c1b6
workflow graph workflow_inputs.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/workflow_inputs.cwl

Branch/Commit ID: 00c5c897b2737bbb101dde85d01cd83ef305f965