Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 5e82174 |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 1.0.7 |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5833078 |
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cnv_codex
CNV CODEX calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: 1.0.9 |
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chksum_seqval_wf_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.2.2 |
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black-diamond-workflow.cwl
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https://github.com/pegasus-isi/cwl-to-dax-reference.git
Path: black-diamond-workflow/cwl/black-diamond-workflow.cwl Branch/Commit ID: master |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: ca6ca613 |
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exome alignment and somatic variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: somatic_exome_workflow.cwl Branch/Commit ID: toil_compatibility |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: d3b8e45 |
