Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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download_check.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/utils/download_check.cwl Branch/Commit ID: master |
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03-map-pe.cwl
ChIP-seq 03 mapping - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/03-map-pe.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: master |
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workflow_mock_ngtax.cwl
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https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_mock_ngtax.cwl Branch/Commit ID: master |
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bgzip and index VCF
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: varscan/bgzip_and_index.cwl Branch/Commit ID: master |
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module-2
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-2.cwl Branch/Commit ID: dev |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0 |
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fail-wf.cwl
Run failtool which will fail |
https://github.com/Duke-GCB/calrissian.git
Path: input-data/fail-wf.cwl Branch/Commit ID: master |
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pcawg_minibam_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: pcawg_minibam_wf.cwl Branch/Commit ID: 1.0.0 |
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GATK-Sub-Workflow-Workflow-h3abionet-haplotype.cwl
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https://github.com/mr-c/h3agatk.git
Path: workflows/GATK/GATK-Sub-Workflow-Workflow-h3abionet-haplotype.cwl Branch/Commit ID: cwl_v1_0 |
