Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph BD Rhapsody™ Sequence Analysis Pipeline

The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

 https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: main

Packed ID: main
workflow graph test-job-1.cwl

https://github.com/liuweiathust/cwl_taste.git

Path: test-job-1.cwl

Branch/Commit ID: master
workflow graph TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

https://github.com/EBI-Metagenomics/workflow-is-cwl.git

Path: workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: master
workflow graph Vcf concordance evaluation workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/vcf_eval_concordance.cwl

Branch/Commit ID: low-vaf
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: master
workflow graph mutect2_and_filter.cwl

Runs mutect2 variant calling and and variant filter.

 https://github.com/demichelislab/SPICE-pipeline-CWL.git

Path: cwl/workflows/mutect2_and_filter.cwl

Branch/Commit ID: main
workflow graph Downsample and HaplotypeCaller

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/downsample_and_recall.cwl

Branch/Commit ID: low-vaf
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 5833078
workflow graph Detect DoCM variants

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/docm_germline.cwl

Branch/Commit ID: master
workflow graph LSU-from-tablehits.cwl

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: tools/LSU-from-tablehits.cwl

Branch/Commit ID: master