Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bulk_analysis.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/bulk_analysis.cwl Branch/Commit ID: bb023f9 |
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ocrevaluation-performance-test-files-wf-pack.cwl#main
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/ocrevaluation-performance-test-files-wf-pack.cwl Branch/Commit ID: master Packed ID: main |
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stdout-wf_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/stdout-wf_v1_0.cwl Branch/Commit ID: 68843d2d829a337c7bb7dc51473f1ff68d6d59ca |
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BLASTP, parse, dump FASTA
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https://github.com/ncbi/cwl-demos.git
Path: blast-pipelines/simple_three_step.cwl Branch/Commit ID: master |
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Scattered variant calling workflow
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl Branch/Commit ID: main |
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pipeline.cwl
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https://github.com/hubmapconsortium/azimuth-annotate.git
Path: pipeline.cwl Branch/Commit ID: 2e4017d |
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mutect2_calling.cwl
GATK4.1.2 Mutect2 workflow |
https://github.com/NCI-GDC/gatk4_mutect2_cwl.git
Path: subworkflows/mutect2_calling.cwl Branch/Commit ID: master |
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PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
https://github.com/ncbi/pgap.git
Path: pgap.cwl Branch/Commit ID: 681555881cbdf95a1f4c29f6dc272eb6ca8e4d60 |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: master |
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exome alignment and somatic variant detection for cle purpose
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/cle_somatic_exome.cwl Branch/Commit ID: 26806d99f8e2a241715fd081e712d4e3763db5b8 |
