Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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scatter-wf3.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf3.cwl Branch/Commit ID: c7c379948c02ba8f048d157f06eb903b1bda9894 Packed ID: main |
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vardictSomaticVariantCaller_v0_1_0.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/vardictSomaticVariantCaller_v0_1_0.cwl Branch/Commit ID: c287ec74267425b1e70ee1f64b6219806c81779b |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 1a6b9e5dea09caa0debbaff30ca39005dfa5e4d4 |
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fastqtosam_pe.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/fastqtosam/fastqtosam_pe.cwl Branch/Commit ID: 1046947f8d2923e6563b3aceac9e435554c5bea1 |
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extract_amplicon_kit_http.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_amplicon_kit_http.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52 |
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Run pindel on provided region
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 9143dc4ebacb9e1df36a712b0be6fa5d982b0c4f |
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Varscan Workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 193b8de694f262ad55c7635a603c20c124748583 |
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/nested.cwl Branch/Commit ID: 83038feb2a6fc3bab952e1ecc2a11bfbc8c557b4 |
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bam to trimmed fastqs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: 9143dc4ebacb9e1df36a712b0be6fa5d982b0c4f |
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WGS QC workflow mouse
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs_mouse.cwl Branch/Commit ID: 9143dc4ebacb9e1df36a712b0be6fa5d982b0c4f |
