Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph map-ordering-v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/map-ordering-v1_1.cwl

Branch/Commit ID: 18a3e768e1eda9bdc63d73ff8336a342e04e7a63
workflow graph ldv_linc_calibrator.cwl

https://git.astron.nl/eosc/prefactor3-cwl.git

Path: workflows/ldv_linc_calibrator.cwl

Branch/Commit ID: 4d7bd88fee5430bda4270a825b18b93c57596dfc
workflow graph spades_pipeline.cwl

https://github.com/EBI-Metagenomics/CWL-assembly.git

Path: cwl/spades_pipeline.cwl

Branch/Commit ID: d3e89b909c89aeb3f4c082f810adce2a6dd32bd5
workflow graph HBA_calibrator.cwl

https://git.astron.nl/eosc/prefactor3-cwl.git

Path: workflows/HBA_calibrator.cwl

Branch/Commit ID: 7b6185e2e6f9d36b1987274e82842c82ba6f8342
workflow graph fr.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_target/fr.cwl

Branch/Commit ID: 1e91001f761abbddeb2c9f4528ed4cec41d113f3
workflow graph scatter2.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatter2.cwl

Branch/Commit ID: 74a08ca0e90a223f98fdec73c88f36d783a4dde0
workflow graph chipseq-se.cwl

Runs ChIP-Seq BioWardrobe basic analysis with single-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/chipseq-se.cwl

Branch/Commit ID: 8587882f145d3eb8e258e7bf819a94f8dd666dbf
workflow graph ldv_linc_calibrator.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/ldv_linc_calibrator.cwl

Branch/Commit ID: dc7a4f725f6e8dde49b0b1db2e3fbde7fb19990a
workflow graph pindel parallel workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel.cwl

Branch/Commit ID: e7e888df9e7d44f036c4c7985e474016ee9e6525
workflow graph allele-vcf-alignreads-se-pe.cwl

Workflow maps FASTQ files from `fastq_files` input into reference genome `reference_star_indices_folder` and insilico generated `insilico_star_indices_folder` genome (concatenated genome for both `strain1` and `strain2` strains). For both genomes STAR is run with `outFilterMultimapNmax` parameter set to 1 to discard all of the multimapped reads. For insilico genome SAM file is generated. Then it's splitted into two SAM files based on strain names and then sorted by coordinates into the BAM format. For reference genome output BAM file from STAR slignment is also coordinate sorted.

https://github.com/Barski-lab/workflows.git

Path: subworkflows/allele-vcf-alignreads-se-pe.cwl

Branch/Commit ID: 744117c1332359de1ed0d2c3c4f314ffcb6797d3