Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph umi molecular alignment workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: low-vaf
workflow graph msa_group_compare.cwl

This workflow compares two groups of sequences by running two steps: \n 1. a MSA aligment to calculate a distance matrix \n 2. generate and plot a phylogenetic tree annotated by group labels \n \n For more information please see: \n https://w3id.org/cwl/view/git/5227e2c45be641c6675c0a24a8b1f72d712fac40/CWL/workflows/msa_group_compare.cwl

https://github.com/CompEpigen/msa_group_compare.git

Path: CWL/workflows/msa_group_compare.cwl

Branch/Commit ID: master
workflow graph bam-genomecov-bigwig.cwl

creates genome coverage bigWig file from .bam file

 https://github.com/Barski-lab/ga4gh_challenge.git

Path: workflows/bam-genomecov-bigwig.cwl

Branch/Commit ID: v0.0.2
workflow graph chksum_seqval_wf_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: 0.5.0
workflow graph Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass4.cwl

Branch/Commit ID: test
workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: f993cad
workflow graph binning.cwl

https://github.com/EBI-Metagenomics/CWL-binning.git

Path: workflows/binning.cwl

Branch/Commit ID: develop
workflow graph 01-qc-se.cwl

ATAC-seq 01 QC - reads: SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/01-qc-se.cwl

Branch/Commit ID: master
workflow graph Detect Variants workflow for WGS pipeline

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants_wgs.cwl

Branch/Commit ID: master
workflow graph full_workflow_notcompact.cwl

https://github.com/teoloup/cwltools.git

Path: full_workflow_notcompact.cwl

Branch/Commit ID: master