Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Varscan Workflow
|
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: master |
|
|
|
1st-wf-generated.cwl
|
Path: 1st-wf-generated.cwl Branch/Commit ID: master |
|
|
|
emblem_textures.cwl
|
Path: textures/emblem_textures.cwl Branch/Commit ID: master |
|
|
|
kmer_build_tree
|
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: master |
|
|
|
assembly-2.cwl
|
Path: workflows/conditionals/assembly/assembly-2.cwl Branch/Commit ID: master |
|
|
|
somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: low-vaf |
|
|
|
SARS_psm_workflow.cwl
|
Path: SARS_psm_workflow.cwl Branch/Commit ID: master |
|
|
|
tRNA_selection.cwl
|
Path: tools/tRNA_selection.cwl Branch/Commit ID: 0fed1c9 |
|
|
|
scatter-wf4.cwl#main
|
Path: tests/scatter-wf4.cwl Branch/Commit ID: main Packed ID: main |
|
|
|
bacterial_screening.cwl
|
Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: test |
