Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Varscan Workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: master |
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1st-wf-generated.cwl
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https://github.com/MgCoders/of-public.git
Path: 1st-wf-generated.cwl Branch/Commit ID: master |
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emblem_textures.cwl
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https://github.com/undu/stellaris-emblem-lab.git
Path: textures/emblem_textures.cwl Branch/Commit ID: master |
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kmer_build_tree
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: master |
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assembly-2.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/conditionals/assembly/assembly-2.cwl Branch/Commit ID: master |
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somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: low-vaf |
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SARS_psm_workflow.cwl
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https://github.com/adamscharlotte/CWL-workflow.git
Path: SARS_psm_workflow.cwl Branch/Commit ID: master |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 0fed1c9 |
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scatter-wf4.cwl#main
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-wf4.cwl Branch/Commit ID: main Packed ID: main |
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bacterial_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: test |
