Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph CRAM_md5sum_checker_wrapper.cwl

This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/DataBiosphere/topmed-workflows.git

Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl

Branch/Commit ID: 1.30.0
workflow graph bulk_process.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_process.cwl

Branch/Commit ID: v1.0
workflow graph Run pindel on provided region

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_region.cwl

Branch/Commit ID: master
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: downsample_and_recall
workflow graph intersect_intervals.cwl

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/intersect_intervals.cwl

Branch/Commit ID: master
workflow graph workflow.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: flow_download/workflow.cwl

Branch/Commit ID: master
workflow graph qiime2 explore sample taxonomic composition

Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-08-taxonomic-analysis.cwl
workflow graph wgetkegg_wf.cwl

https://github.com/manabuishii/wgetkegg.git

Path: wgetkegg_wf.cwl

Branch/Commit ID: master
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 0cf06f1
workflow graph Sentinel-3 SLSTR Level-2 reprojection and tiling

This service takes as input a Sentinel-3 SLSTR Level 2 (SL_2_LST____) product on DESCENDING pass and does the reprojection and tiling

 https://github.com/EOEPCA/proc-ades.git

Path: docs/examples/slstr-tiling.cwl

Branch/Commit ID: master

Packed ID: slstr-tiling