Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 0bc1c33a2293e054ad00974971edc79c13252cc7 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a |
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rna annotation
RNAs - predict, cluster, identify, annotate |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/rna-annotation.workflow.cwl Branch/Commit ID: 8a5ded15fad8ee1a4315aef1fdc1d53cdcdc12b8 |
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Preprocess fastq
Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed. |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 8a5ded15fad8ee1a4315aef1fdc1d53cdcdc12b8 |
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abundance
abundace profiles from annotated files, for protein and/or rna |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/abundance.workflow.cwl Branch/Commit ID: 8a5ded15fad8ee1a4315aef1fdc1d53cdcdc12b8 |
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qc-basic.workflow.cwl
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https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/qc-basic.workflow.cwl Branch/Commit ID: 8a5ded15fad8ee1a4315aef1fdc1d53cdcdc12b8 |
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corrupt_model.cwl
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https://git.astron.nl/RD/LINC.git
Path: workflows/linc_target/corrupt_model.cwl Branch/Commit ID: 0601b0801bc238c464e954803c16b48bd7e6b14e |
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Per-region pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: e7e888df9e7d44f036c4c7985e474016ee9e6525 |
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step-valuefrom2-wf_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step-valuefrom2-wf_v1_0.cwl Branch/Commit ID: 68843d2d829a337c7bb7dc51473f1ff68d6d59ca |
