Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_nonhuman.cwl

Branch/Commit ID: master
workflow graph rhapsody_targeted_1.9-beta.cwl#VDJ_tcr.cwl

https://github.com/longbow0/cwl.git

Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl

Branch/Commit ID: master

Packed ID: VDJ_tcr.cwl
workflow graph HBA_target.cwl

https://git.astron.nl/eosc/prefactor3-cwl.git

Path: workflows/HBA_target.cwl

Branch/Commit ID: master
workflow graph maf-processing-pair.cwl

https://github.com/mskcc/argos-cwl.git

Path: modules/pair/maf-processing-pair.cwl

Branch/Commit ID: master
workflow graph panel of normals workflow

https://github.com/mnneveau/cancer-genomics-workflow.git

Path: panel_of_normals/workflow.cwl

Branch/Commit ID: master
workflow graph salmon_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/salmon/paired_end/salmon_wf_pe.cwl

Branch/Commit ID: master
workflow graph rhapsody_pipeline_2.0.cwl#VDJ_Assemble_and_Annotate_Contigs_IG.cwl

https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: main

Packed ID: VDJ_Assemble_and_Annotate_Contigs_IG.cwl
workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-noscreen-fasta.workflow.cwl

Branch/Commit ID: master
workflow graph output_reference_workflow_input.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/output_reference_workflow_input.cwl

Branch/Commit ID: main
workflow graph exomeseq-gatk4-01-preprocessing.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-01-preprocessing.cwl

Branch/Commit ID: gatk4-fixes