Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: cb15f907132fb90bc66b39bb0af3c211801feba1 |
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readme-genePrediction-workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_create_readme/readme-genePrediction-workflow.cwl Branch/Commit ID: e332b88ced14c57ec7a0f2edbdcd61afb1228e77 |
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cram_to_bam workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: c61af827113ebc41596aa839c65d21b4d2b0c8b6 |
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vcf_to_aliquot_maf_wf.cwl
This copy is for use with the new merged panel of normals |
https://github.com/NCI-GDC/aliquot-maf-cwl.git
Path: vcf-to-aliquot-maf/vcf_to_aliquot_maf_wf.cwl Branch/Commit ID: 8390ae07f727491c10916024d31429a4b25c143b |
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mut2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut2.cwl Branch/Commit ID: 4a5fe26e32d244d95f9483c3edfc3df04f3e5f7b |
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env-wf2.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/env-wf2.cwl Branch/Commit ID: 979083396fee912fca8ef778174216d317338a00 |
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msi_workflow.cwl
Workflow to run the MSI analysis on a batch of samples and merge the results back into a single data clinical file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/msi_workflow.cwl Branch/Commit ID: 2a88d5c2d139ff817b21b480ccf9c1cd7139b00c |
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download_quality_control_single_rename_spot.cwl
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https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/sra/download_quality_control_single_rename_spot.cwl Branch/Commit ID: 590ed6c9803ba670411c48650bc24deef7863925 |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 7e3e1cb249e85285e27ef3ebd4104965f835241d |
