Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	phase VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: 18600518ce6539a2e29c1707392a4c5da5687fa3
	wgs alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c
	Motif Finding with HOMER with target and background regions from peaks Motif Finding with HOMER with target and background regions from peaks --------------------------------------------------- HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein). It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other. It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment. HOMER also tries its best to account for sequenced bias in the dataset. It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem. For more information please refer to: ------------------------------------- [Official documentation](http://homer.ucsd.edu/homer/motif/)	https://github.com/datirium/workflows.git Path: workflows/homer-motif-analysis-peak.cwl Branch/Commit ID: b1a5dabeeeb9079b30b2871edd9c9034a1e00c1c
	fusion_workflow.cwl Fusion workflow, runs STARFusion and Arriba	https://github.com/bd2kgenomics/dockstore_workflow_fusion.git Path: fusion_workflow.cwl Branch/Commit ID: a0475b43610078cb2b881908aa9bcbd6beb3f1e9
	contamination_foreign_chromosome This workflow detect and remove foreign chromosome from a DNA fasta file	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/Contamination/contamination-foreign-chromosome-blastn.cwl Branch/Commit ID: 11f70a71cb68b3960c2d410ba1fdcd3b8a7e1419
	Trim and reformat reads (single and paired end version)	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: workflows/trim_and_reformat_reads.cwl Branch/Commit ID: 7bb76f33bf40b5cd2604001cac46f967a209c47f
	metaphlan_wfl.cwl	https://github.com/stevetsa/metaphlan-sbcgc.git Path: metaphlan_wfl.cwl Branch/Commit ID: 9b824c91cebb726f8e7d87c5f1f5760333fed9be
	exome alignment and somatic variant detection for cle purpose	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	Hello World Outputs a message using echo	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/hello-workflow.cwl Branch/Commit ID: 1eb6bfe3c77aebaf69453a669d21ae7a5a78056f