Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph selfcal_targ_hba.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_target/selfcal_targ_hba.cwl

Branch/Commit ID: 16b52facea91f7ebd2200c471b69a8c6a49b9e66
workflow graph bwa_index

Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_index.cwl

Branch/Commit ID: 6f16906b30adad5136b0c8135d1e7c07c5741763
workflow graph samtools_view_sam2bam

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl

Branch/Commit ID: 6f16906b30adad5136b0c8135d1e7c07c5741763
workflow graph cnv_codex

CNV CODEX calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl

Branch/Commit ID: 6f16906b30adad5136b0c8135d1e7c07c5741763
workflow graph trimmed_fastq

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: 6f16906b30adad5136b0c8135d1e7c07c5741763
workflow graph cnv_manta

CNV Manta calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl

Branch/Commit ID: 6f16906b30adad5136b0c8135d1e7c07c5741763
workflow graph env-wf1.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/env-wf1.cwl

Branch/Commit ID: 19f2cb6e21db8624155c7e253b89c57df536fcc1
workflow graph directory.cwl

Inspect provided directory and return filenames. Generate a new directory and return it (including content).

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/directory.cwl

Branch/Commit ID: cf9d7cdefa6dfb3b678636da02bc55b6108c04ac
workflow graph 03-map-se-blacklist-removal.cwl

ATAC-seq 03 mapping - reads: SE - blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl

Branch/Commit ID: 6d9457382f0b7cc2510e148d21383261280d17ed
workflow graph readme-assembly-workflow.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_create_readme/readme-assembly-workflow.cwl

Branch/Commit ID: e332b88ced14c57ec7a0f2edbdcd61afb1228e77