Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: master
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop
workflow graph Transcripts annotation workflow

https://github.com/hmenager/workflow-is-cwl.git

Path: workflows/TranscriptsAnnotation-wf.cwl

Branch/Commit ID: master
workflow graph msi.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/subworkflows/msi.cwl

Branch/Commit ID: master
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 5e82174
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/create-vis-symlink-archive.git

Path: pipeline.cwl

Branch/Commit ID: 6e55233
workflow graph GATK-v1.0-Workflow.cwl

https://github.com/Johnnywang92/GATK-CWL-WorkFlow-201903.git

Path: GATK-v1.0-Workflow.cwl

Branch/Commit ID: master
workflow graph QIIME2 Step 3

QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting

https://github.com/bespin-workflows/16s-qiime2.git

Path: 16s-step3-alpha-beta-analysis.cwl

Branch/Commit ID: develop
workflow graph foreign_screening.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/foreign_screening.cwl

Branch/Commit ID: master
workflow graph Unaligned to aligned BAM

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: low-vaf