Explore Workflows

Some workflow engines won't stage files in our nested structure, so parse it out here

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/sum-wf.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/iwdr_with_nested_dirs.cwl

Branch/Commit ID: master

https://github.com/KevinSayers/CWL_RNAtoy.git

Path: rnatoy.cwl

Branch/Commit ID: master

https://github.com/farahzkhan/bcbio_test_cwlprov.git

Path: somatic/somatic-workflow/main-somatic.cwl

Branch/Commit ID: master

Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak) without assembly step by canu, CWLized by Tazro Ohta (@inutano)

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/animal-genome-assembly/animal-genome-assembly.packed.cwl

Branch/Commit ID: main

Packed ID: main

https://github.com/yyoshiaki/DAT2-cwl.git

Path: workflow/transcriptome_assemble/transcriptome_assemble.cwl

Branch/Commit ID: develop

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 1b0851e

https://github.com/arvados/czi-pangenome-usecase.git

Path: pangenome-generate_spoa.cwl

Branch/Commit ID: main

Single-cell Reference Indices Builds a Cell Ranger and Cell Ranger ARC compatible reference folders from the custom genome FASTA and gene GTF annotation files

https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-ref-indices-wf.cwl

Branch/Commit ID: main