Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: master |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: salmon-rnaseq/steps/salmon-quantification.cwl Branch/Commit ID: 14985c9 |
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exome alignment and variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: exome_workflow.cwl Branch/Commit ID: toil_compatibility |
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bacterial_orthology
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: test |
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Filter differentially expressed genes from DESeq for Tag Density Profile Analyses
Filters differentially expressed genes from DESeq for Tag Density Profile Analyses ================================================================================== Tool filters output from DESeq pipeline run for genes to create a file with regions of interest for Tag Density Profile Analyses. |
https://github.com/datirium/workflows.git
Path: workflows/filter-deseq-for-heatmap.cwl Branch/Commit ID: master |
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meds-wf.cwl
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https://github.com/EiffL/metacal-pipeline.git
Path: tools/meds-wf.cwl Branch/Commit ID: master |
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pass-unconnected.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/pass-unconnected.cwl Branch/Commit ID: master |
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cache_asnb_entries
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: e9cc6de8cd1e00345969c646e5e6f27d7d10420f |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 1.0.9 |
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samtools_sort
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/samtools_sort.cwl Branch/Commit ID: 1.0.7 |
