Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wf-alignment.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: NA24385-sv/NA24385-sv-workflow/wf-alignment.cwl Branch/Commit ID: 9606af30d5f047745a1cd7ec1a59d65508ed256e |
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hi-c-processing-bam.cwl
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https://github.com/4dn-dcic/pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-bam.cwl Branch/Commit ID: c0c0aba5d8f23c49c2a47317b4b6ac994f00ea59 |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: d3b8e458b7f9e52a12c0008aca645de9230e8bc9 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 30397448563d06c342b25a3603c97b6fff7ba7d3 |
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collect_feature_and_variant_counts_workflow.cwl
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https://github.com/rdocking/sgseq_cwl.git
Path: cwl/collect_feature_and_variant_counts_workflow.cwl Branch/Commit ID: 1b96beda80640ca21c2f4fcd317f890be7fa9c5e |
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hi-c-processing-pairs.cwl
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https://github.com/4dn-dcic/pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-pairs.cwl Branch/Commit ID: 91d67820264c8ebac829174cb1d0c7c5e30c613f |
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wf_demultiplex_se.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_demultiplex_se.cwl Branch/Commit ID: 768f21a16794479b36af28bdf4fb00971afa6192 |
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Unaligned to aligned BAM
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https://github.com/markrobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: 0ae2468ab2ba0b9a196c2aa89b580555750bf0f6 Packed ID: align.cwl |
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bgzip and index VCF
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https://github.com/mnneveau/cancer-genomics-workflow.git
Path: varscan/bgzip_and_index.cwl Branch/Commit ID: 5a67e91727c8eb44afff27f9e4774eafef579c58 |
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qc-basic.workflow.cwl
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https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/qc-basic.workflow.cwl Branch/Commit ID: 932da3abed7166bd5a962871386ba2c31d47b85c |
