Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe |
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kfdrc_process_pe_readslist2.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: subworkflows/kfdrc_process_pe_readslist2.cwl Branch/Commit ID: 105340db0e99918fd7e8a8e14f1cde3022b44653 |
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varscanW.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/ambarishK/bio-cwl-tools.git
Path: varscanW.cwl Branch/Commit ID: 530e671c113e91fe6b9114eda32103bb980450c7 |
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Per-region pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87 |
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fastq2fasta.cwl
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https://github.com/hpobio-lab/viral-analysis.git
Path: cwl/fastq2fasta/fastq2fasta.cwl Branch/Commit ID: 967e06fd4e5847e326a9b77ff3f0354aff69329a |
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pangenome-generate.cwl
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https://github.com/hpobio-lab/viral-analysis.git
Path: cwl/pangenome-generate/pangenome-generate.cwl Branch/Commit ID: 967e06fd4e5847e326a9b77ff3f0354aff69329a |
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Protein_Inference_workflow.cwl
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https://github.com/adamscharlotte/CWL-workflow.git
Path: Protein_Inference_workflow.cwl Branch/Commit ID: aa273c122d4405b8ad099512baf27178eece46f2 |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6 |
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bam2fasta.cwl
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https://github.com/hpobio-lab/viral-analysis.git
Path: cwl/fastq2fasta/bam2fasta.cwl Branch/Commit ID: 967e06fd4e5847e326a9b77ff3f0354aff69329a |
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pangenome-generate.cwl
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https://github.com/hpobio-lab/viral-analysis.git
Path: cwl/pangenome-generate/pangenome-generate.cwl Branch/Commit ID: 1b1139d72e1bcc870424c87c7325e27ed79bc42c |
