Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 0514ffe248dd11068a3f2268bc67b6ce5ab051d2
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416
	kfdrc_alignment_CramOnly_wf.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: workflows/kfdrc_alignment_CramOnly_wf.cwl Branch/Commit ID: edd5a6b2df3b4d0503e09fb17f5f1ef278594af3
	FASTQ to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
	bam to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	kmer_seq_entry_extract_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad
	kmer_gc_extract_wnode	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_gc_extract_wnode.cwl Branch/Commit ID: bf7e02ee89d1bb18462cefdbe0db41b09fe75236
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416