Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment with qc
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https://github.com/genome/cancer-genomics-workflow.git
Path: exome_alignment.cwl Branch/Commit ID: 6eb7d35ad46207f4ff49e84106b717e17331eb4b |
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download_fastq.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/utils/download_fastq.cwl Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28 |
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upload_results.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/utils/upload_results.cwl Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28 |
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harmonization_bwa_mem_prod.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem_prod.cwl Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28 |
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haplotypecaller.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/variant_calling/haplotypecaller.cwl Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28 |
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alignment_bwa_mem_prod.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem_prod.cwl Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28 |
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Detect DoCM variants
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https://github.com/genome/cancer-genomics-workflow.git
Path: docm/germline_workflow.cwl Branch/Commit ID: d1ee6a2a323cee7e4af00c7e0b926c2192038e1d |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/cancer-genomics-workflow.git
Path: unaligned_bam_to_bqsr/workflow.cwl Branch/Commit ID: d1ee6a2a323cee7e4af00c7e0b926c2192038e1d |
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WGS QC workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: qc/workflow_wgs.cwl Branch/Commit ID: d1ee6a2a323cee7e4af00c7e0b926c2192038e1d |
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strelka workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: strelka/workflow.cwl Branch/Commit ID: eb565eac07209017b12ed79057b40cbf44fb6a0d |
