Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bwa_pe.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/bwa_pe.cwl

Branch/Commit ID: d5757ab1f3aad3c542950e1dbe8f9d2eec74bede
workflow graph varscan somatic workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: varscan/varscan.cwl

Branch/Commit ID: d1ee6a2a323cee7e4af00c7e0b926c2192038e1d
workflow graph Transcripts annotation workflow

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/TranscriptsAnnotation-wf.cwl

Branch/Commit ID: 72bbd5a80688e6a387bfdff5881db2cc3523f7b7
workflow graph 02-trim-se.cwl

ChIP-seq 02 trimming - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl

Branch/Commit ID: 71146d85ae7f0c562ec0d454fbbb7085a827356e
workflow graph integrity.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/integrity.cwl

Branch/Commit ID: d5757ab1f3aad3c542950e1dbe8f9d2eec74bede
workflow graph 01-qc-se.cwl

ChIP-seq 01 QC - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/01-qc-se.cwl

Branch/Commit ID: 71146d85ae7f0c562ec0d454fbbb7085a827356e
workflow graph 03-map-se.cwl

ChIP-seq 03 mapping - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/03-map-se.cwl

Branch/Commit ID: 71146d85ae7f0c562ec0d454fbbb7085a827356e
workflow graph conditional_markduplicates.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/conditional_markduplicates.cwl

Branch/Commit ID: d5757ab1f3aad3c542950e1dbe8f9d2eec74bede
workflow graph download_check.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/utils/download_check.cwl

Branch/Commit ID: 3c62f1ddf8a54601da3cfc16c37d0cb0d6a2ea28
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: 6430df56f7345f837d3f9c3f7fb5af5aa9dadc90