Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a
	Per-region pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 45d134ce3d436c53637a2d83755e9b4613267e9f
	bam to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325
	cache_asnb_entries	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: 70e530b65b33301032b7510095d89e497bf5e34e
	exome alignment and germline variant detection	https://github.com/litd/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5
	THOR - differential peak calling of ChIP-seq signals with replicates What is THOR? -------------- THOR is an HMM-based approach to detect and analyze differential peaks in two sets of ChIP-seq data from distinct biological conditions with replicates. THOR performs genomic signal processing, peak calling and p-value calculation in an integrated framework. For more information please refer to: ------------------------------------- Allhoff, M., Sere K., Freitas, J., Zenke, M., Costa, I.G. (2016), Differential Peak Calling of ChIP-seq Signals with Replicates with THOR, Nucleic Acids Research, epub gkw680.	https://github.com/datirium/workflows.git Path: workflows/rgt-thor.cwl Branch/Commit ID: 2f0db4b3c515f91c5cfda19c78cf90d339390986
	Hello World Puts a message into a file using echo	https://github.com/markrobbo/workflows.git Path: workflows/hello/hello.cwl Branch/Commit ID: 0ae2468ab2ba0b9a196c2aa89b580555750bf0f6 Packed ID: main
	tt_kmer_top_n.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a