Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	spurious_annot	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	Execute CRISPR	https://github.com/ncbi/pgap.git Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	umi duplex alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 64e10813d527c67ed7987697d5c47cdbbaadbebd
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: 5a4fed24f01f6d7c7ce1f595b272d82d97d4f9bd
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e