Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	module-5	https://github.com/mskcc/roslin-variant.git Path: setup/cwl/module-5.cwl Branch/Commit ID: 7a2864f5af7723657406e4f3e94f92db09ec90fc
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: a93be3183c2218ee50f13ae2675dd1cde563fdbc
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_download/workflow.cwl Branch/Commit ID: fa1014583e14c522af37ec120f428c3336ac689f
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/revsort.cwl Branch/Commit ID: 3ed10d0ea7ac57550433a89a92bdbe756bdb0e40
	integrity.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: 0d3fdddeae5a398e476d91aa98766965866d8eae
	Preprocess fastq Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 091374dc59a23966338638a668ae397d4ee20b2f
	Identifies non-coding RNAs using Rfams covariance models	https://github.com/EBI-Metagenomics/workflow-is-cwl.git Path: workflows/cmsearch-multimodel-wf.cwl Branch/Commit ID: e9bbe2917384efc75ba067db23612bc8e22f3f06
	04-quantification-pe-stranded.cwl RNA-seq 04 quantification	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 5f120e5bc3c0f75bfbc636ea2c6f4393f5d45ca1
	abundance abundace profiles from annotated files, for protein and/or rna	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/abundance.workflow.cwl Branch/Commit ID: 091374dc59a23966338638a668ae397d4ee20b2f