Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: 909f26beaf96c2cdfe208f87ecd1e9c3de20b81c
	tt_fscr_calls_pass1	https://github.com/ncbi/pgap.git Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 909f26beaf96c2cdfe208f87ecd1e9c3de20b81c
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: cfdcd0735e8fb1ac0b97f1a5cbe0cc7e00033dd0
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b
	lane_map_and_stats.cwl	https://github.com/cancerit/cgpRna.git Path: cwls/tools/lane_map_and_stats.cwl Branch/Commit ID: ee8869f107c2a4fb41144093c8c4e033a53b17d3
	varscan somatic workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87
	exome alignment and germline variant detection, with optitype for HLA typing	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe
	kfdrc_process_pe_readslist2.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: subworkflows/kfdrc_process_pe_readslist2.cwl Branch/Commit ID: 105340db0e99918fd7e8a8e14f1cde3022b44653
	varscanW.cwl Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.	https://github.com/ambarishK/bio-cwl-tools.git Path: varscanW.cwl Branch/Commit ID: 530e671c113e91fe6b9114eda32103bb980450c7
	Per-region pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87