Explore Workflows

Remove reads from fasta files based on sequence stats. Return fasta files with reads passed and reads removed.

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/preprocess-fasta.workflow.cwl

Branch/Commit ID: 7b1df2ecce5a8727f2c546c5baa45c919edd8a76

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_align_filter.cwl

Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines13-wf.cwl

Branch/Commit ID: a062055fddcc7d7d9dbc53d28288e3ccb9a800d8

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl

Branch/Commit ID: 0184e647cde1bc44279107d6df31b3ebb138769c

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: e71779665f42fcf34601b0f65e030bb0dd47fa79

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_detect_variants.cwl

Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/lowercase-directory.cwl

Branch/Commit ID: a62bf3b31df83784c017d30a83ed8e01d454bf1c

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: dc2c019c1aa24cc01b451a0f048cf94a35f163c4

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/step-valuefrom-wf.cwl

Branch/Commit ID: 10492acee927c177933160f6ad67085f9112b0d1

https://github.com/ncbi/pgap.git

Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl

Branch/Commit ID: e71779665f42fcf34601b0f65e030bb0dd47fa79