Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 6949082038c1ad36d6e9848b97a2537aef2d3805
	kmer_seq_entry_extract_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037
	wgs alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54
	scRNA-seq pipeline using Salmon and Alevin	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: pipeline.cwl Branch/Commit ID: b9c8e269cc846e2ac6d3cdc902c0e37ac58b0ff4
	chipseq-header.cwl	https://github.com/datirium/workflows.git Path: metadata/chipseq-header.cwl Branch/Commit ID: 935a78f1aff757f977de4e3672aefead3b23606b
	Seurat Cluster Seurat Cluster ============== Runs filtering, integration, and clustering analyses for Cell Ranger Count Gene Expression or Cell Ranger Aggregate experiments.	https://github.com/datirium/workflows.git Path: workflows/seurat-cluster.cwl Branch/Commit ID: b1a5dabeeeb9079b30b2871edd9c9034a1e00c1c
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65
	bwa_pe.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/bwa_pe.cwl Branch/Commit ID: 0495e3095182b2e1b4d6274833b3d2ce30347a4e
	search.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/search.cwl Branch/Commit ID: 227f35a5ed50c423afba2353871950aa61d58872 Packed ID: main