Explore Workflows

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_msisensor_pro_module.cwl

Branch/Commit ID: 7da5645975f5712362cce7908d2ab138e05876fb

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_dispatch/workflow.cwl

Branch/Commit ID: 6f0888f9e4b15172109dcb1db2ee63f154a79100

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl

Branch/Commit ID: 7bfd77118cdc80dd7150115dd7a1a7ee6046f6fe

This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs

https://github.com/svonworl/oxog-dockstore-tools.git

Path: qa_check_subwf.cwl

Branch/Commit ID: b38a8a4785746b8267913ea5389e21ae6dc921a3

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl

Branch/Commit ID: 0e98de8f692bb7b9626ed44af835051750ac20cd

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_dispatch/2other_species/workflow.cwl

Branch/Commit ID: 6f0888f9e4b15172109dcb1db2ee63f154a79100

Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl)

https://github.com/Barski-lab/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: cf678db8304ffaa20c1d6c854364db5ed41803c2

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/stdout-wf_v1_2.cwl

Branch/Commit ID: c46a3ad4e488e75b7a58032c129f0605f5e84f40

Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc

Packed ID: qiime2-08-taxonomic-analysis.cwl

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: 60d8a9e6c5f571ec9b37f10290a1f4613013f3e1