Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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unix_align_workflow.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/unix/unix_align_workflow.cwl Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7 |
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preprocess fastq
Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed. |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 1b1bb901b849b32cbfc4cb58d736bb617d514319 |
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bams2gvcf.woBQSR_male_chrXY_wXTR.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_male_chrXY_wXTR.cwl Branch/Commit ID: 2862ec3c609561245267e5f32e7b94eb353e2d5b |
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fastqPE2bam.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/fastqPE2bam.cwl Branch/Commit ID: 2862ec3c609561245267e5f32e7b94eb353e2d5b |
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bams2gvcf.wBQSR.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.wBQSR.cwl Branch/Commit ID: 2862ec3c609561245267e5f32e7b94eb353e2d5b |
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mutect panel-of-normals workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/panel_of_normals.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5 |
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gunzip-workflow.cwl
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https://github.com/NAL-i5K/CWL_Common-Workflow-Language.git
Path: demo_workflow4/gunzip-workflow.cwl Branch/Commit ID: 263fb1af2bb9b831c67097404dbd39adf1254666 |
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rna annotation
RNAs - predict, cluster, identify, annotate |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/rna-annotation.workflow.cwl Branch/Commit ID: 1b1bb901b849b32cbfc4cb58d736bb617d514319 |
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transform.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/fastq_readgroup_stats/transform.cwl Branch/Commit ID: 017c7572ea309c7d5b34bcc9bc1bdafbe47cb515 |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 891c996dbd23d8154ec7609a56da3de841ae124c |
