Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	assm_assm_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 9144d08fa7f4e852498761481dceab477167fa65
	tRNA_selection.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/tRNA_selection.cwl Branch/Commit ID: 7bb76f33bf40b5cd2604001cac46f967a209c47f
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e
	blastp_wnode_struct	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: 656113dcac0de7cef6cff6c688f61441ee05872a
	SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.	https://github.com/datirium/workflows.git Path: tools/soupx-subworkflow.cwl Branch/Commit ID: c9e7f3de7f6ba38ee663bd3f9649e8d7dbac0c86
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	bulk scRNA-seq pipeline using Salmon	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: bulk-pipeline.cwl Branch/Commit ID: 81c13b4aee9478370116ceb5c933c8a4427a6030
	Gene expression merge - combines RPKM gene expression from several experiments Gene expression merge - combines RPKM gene expression from several experiments =================================================================================== Workflows merges RPKM gene expression from several experiments based on the values from GeneId, Chrom, TxStart, TxEnd and Strand columns. Reported RPKM columns are renamed based on the experiments names.	https://github.com/datirium/workflows.git Path: workflows/feature-merge.cwl Branch/Commit ID: 09267e79fd867aa68a219c69e6db7d8e2e877be2
	workflow.cwl	https://github.com/reanahub/reana-demo-cms-h4l.git Path: workflow/workflow.cwl Branch/Commit ID: 6c35ce9b920e41802c5f48f30b9d7bff3e03ec41
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 7ebb8d2757914d16520b00571a281e2ad86a42cf