Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Chipseq alignment with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 061d3a2fbcd8a1c39c0b38c549e528deb24a9d54
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 861d9baa067af98d794ba0ed4e43aa42e37d8a24
	bismark-methylation-se.cwl Bismark Methylation pipeline. We can use indices_folder as genome_folder for bismark_extract_methylation step, because it insludes the original FASTA files too.	https://github.com/Barski-lab/workflows.git Path: workflows/bismark-methylation-se.cwl Branch/Commit ID: cf84038de256c7ca98657ad81734d1aca1dad8c1
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
	tt_hmmsearch_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: 861d9baa067af98d794ba0ed4e43aa42e37d8a24
	bwa_se.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/bwa_se.cwl Branch/Commit ID: 0495e3095182b2e1b4d6274833b3d2ce30347a4e
	tt_kmer_top_n.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 92118627c800e4addb7e29b9dabcca073a5bae71
	step-valuefrom4-wf.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/step-valuefrom4-wf.cwl Branch/Commit ID: 0e37d46e793e72b7c16b5ec03e22cb3ce1f55ba3
	rnaseq-star-rsem-deseq2.cwl	https://github.com/pitagora-network/DAT2-cwl.git Path: workflow/rna-seq/rnaseq-star-rsem-deseq2/rnaseq-star-rsem-deseq2.cwl Branch/Commit ID: 0cd20e1be620ae0817a1aa4286d73b78c89809f0