Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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varscan somatic workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: downsample_and_recall |
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wf_full_IDR_pipeline_2inputs_scatter.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_2inputs_scatter.cwl Branch/Commit ID: master |
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predict-workflow.cwl
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https://github.com/duke-gcb/imads-worker.git
Path: predict_service/predict-workflow.cwl Branch/Commit ID: master |
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wf-loadContents4.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/wf-loadContents4.cwl Branch/Commit ID: master |
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chksum_seqval_wf_paired_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_paired_fq.cwl Branch/Commit ID: 0.2.3 |
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Raw sequence data to BQSR
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: low-vaf |
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dragen-germline-pipeline__4.2.4.cwl
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https://github.com/umccr/cwl-ica.git
Path: workflows/dragen-germline-pipeline/4.2.4/dragen-germline-pipeline__4.2.4.cwl Branch/Commit ID: main |
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count-lines5-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: master |
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pcawg_minibam_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/icgc-tcga-pancancer/pcawg-minibam.git
Path: pcawg_minibam_wf.cwl Branch/Commit ID: 1.0.0 |
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qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-05-phylogeny.cwl Branch/Commit ID: develop |
