Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	abundance abundace profiles from annotated files, for protein and/or rna	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/abundance.workflow.cwl Branch/Commit ID: 3e967f035c10a176b9457331df0b3374a8562b26
	final-workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: final-workflow.cwl Branch/Commit ID: c4c5822441a6a7342e9fdede8e06c56ff865c74c
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 7edbf07405191db65a913e311a7f2260b076d36c
	Add snv and indel bam-readcount files to a vcf	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 7f9dfad8e45ca096ae738cff646195b2b1ba7d7f
	03-map-pe.cwl STARR-seq 03 mapping - reads: PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/STARR-seq_pipeline/03-map-pe.cwl Branch/Commit ID: 3a4314c66c1eb090e656af5a0d388cec87d65318
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: be32f1363f9a9a9247d738e9593b207e9c5172c8
	Preprocess fastq Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 6c5d0068bdb4f19a36a653c39964aefb9e5a7b1b
	02-trim-pe.cwl STARR-seq 02 trimming - reads: PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/STARR-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: be32f1363f9a9a9247d738e9593b207e9c5172c8
	Preprocess fastq Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 3e967f035c10a176b9457331df0b3374a8562b26