Explore Workflows

Assemble a set of reads using SKESA

https://github.com/ncbi/pgap.git

Path: assemble.cwl

Branch/Commit ID: c64599f5db2437f9323d41cc3d8d9efb20a2667e

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/step-valuefrom2-wf_v1_1.cwl

Branch/Commit ID: e413f9b185f0060ffbdd876062133d65daecb7da

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_format_expr_v1_2.cwl

Branch/Commit ID: e413f9b185f0060ffbdd876062133d65daecb7da

Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/trim-rnaseq-se-dutp.cwl

Branch/Commit ID: 94c6ea7bf4b64599746d778568efbd8e10f0d5ba

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/struct_output.cwl

Branch/Commit ID: 3df778190c16ee0c284a7017ca3173276cb91045

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/BuildCembaReferences.cwl

Branch/Commit ID: 21798e64d0db161be1af0d4584ddf0e496dc243c

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/align_sort_markdup.cwl

Branch/Commit ID: bfcb5ffbea3d00a38cc03595d41e53ea976d599d

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: 3bed7bbacf625d2dc95894efba43e45294e427a3

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/workflow_inputs.cwl

Branch/Commit ID: 21798e64d0db161be1af0d4584ddf0e496dc243c

a workflow that performs grep followed by sort

https://github.com/ResearchObject/runcrate.git

Path: tests/data/grepsort-run-1/snapshot/grepsort.cwl

Branch/Commit ID: 75e66cf1daa65d1371e204cd4d1f8ae92d87cb50