Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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scatter-wf1.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf1.cwl Branch/Commit ID: 0184e647cde1bc44279107d6df31b3ebb138769c |
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Raw sequence data to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00 |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 7e875f77b615b4f7ebfb23a1da30eb216cc52919 |
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scatter-wf1.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf1.cwl Branch/Commit ID: 10492acee927c177933160f6ad67085f9112b0d1 |
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count-lines3-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines3-wf.cwl Branch/Commit ID: 0184e647cde1bc44279107d6df31b3ebb138769c |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: cabb1a9a95244e93294727be8cf5816c38992cb0 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 5cb188131f786ed33156e2f0e3dd63ab9c04245d |
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Filter Protein Seeds I; Find ProSplign Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: f76a7f4a81ef4e60fa9a3964445162c92bf3d57c |
