Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Filter single sample sv vcf from paired read callers(Manta/Smoove)
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe |
|
|
|
cluster_blastp_wnode and gpx_qdump combined
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58 |
|
|
|
WGS QC workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b |
|
|
|
Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b |
|
|
|
Run genomic CMsearch (5S rRNA)
|
https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 546742b523ce12f6246a52c838a51920a08dad4b |
|
|
|
Raw sequence data to BQSR
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe |
|
|
|
Run tRNAScan
|
https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 546742b523ce12f6246a52c838a51920a08dad4b |
|
|
|
Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe |
|
|
|
spurious_annot
|
https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 546742b523ce12f6246a52c838a51920a08dad4b |
|
|
|
exome alignment with qc
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b |
