Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph icgc_pcawg_dkfz_embl_workflow.cwl

https://github.com/sbg/sbg_dockstore_tools.git

Path: pcawg/vc/icgc_pcawg_dkfz_embl_workflow.cwl

Branch/Commit ID: 01f35f8040b45199c6cf58bbd838f398d0ec8dc3
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pvacseq.cwl

Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b
workflow graph amplicon_metrics.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/amplicon_metrics.cwl

Branch/Commit ID: 14558b578bad217685ae3c4807ead2a4392d0319
workflow graph env-wf1.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/env-wf1.cwl

Branch/Commit ID: 4d06b9efd26c5813c13684ebcc95547bb75ddfcc
workflow graph merge and annotate svs with population allele freq

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/merge_svs.cwl

Branch/Commit ID: 9c9e6a6a48eb321804ce772a2c2c12b4f2f32529
workflow graph rw-flow.cwl

run multiple rw stages sequentially using earlier step output as later stage input_bam

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/rw-flow.cwl

Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653
workflow graph bam to trimmed fastqs and HISAT alignments

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b
workflow graph Tumor-Only Detect Variants workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: detect_variants/tumor_only_detect_variants.cwl

Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a
workflow graph exomeseq-gatk4-03-organizedirectories.cwl

https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl

Branch/Commit ID: f07a07037e7c162f117b3706614d885741a44518
workflow graph WGS QC workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0