Explore Workflows

https://github.com/ncbi-gpipe/pgap.git

Path: bacterial_noncoding/wf_bacterial_noncoding.cwl

Branch/Commit ID: bf7e02ee89d1bb18462cefdbe0db41b09fe75236

https://github.com/NLeSC/scriptcwl.git

Path: scriptcwl/examples/add_multiply_example.cwl

Branch/Commit ID: 56274fd44550c65385a1ab127402b7339fc18043

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-giab-mix/somatic-giab-mix-workflow/wf-alignment.cwl

Branch/Commit ID: c4592973b1580e3ff44cb697f64b12345b91e6f5

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 5dc7c5ca618a248a99bd4bf5f3042cdb21947193

Split reads in a BAM file by strands and index forward and reverse output BAM files

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/quant/split-bams-by-strand-and-index.cwl

Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 135976dc51f067b76db0a923a832d892ed64264c

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4

https://github.com/4dn-dcic/pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-parta-juicer.cwl

Branch/Commit ID: 91d67820264c8ebac829174cb1d0c7c5e30c613f

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 583307878ab83c5845c897f03db920ae8e1929e2