Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 2104dc36c775de93de3fef77e7f82a19da76b6e3
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 2104dc36c775de93de3fef77e7f82a19da76b6e3
workflow graph transform.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/transform.cwl

Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 316831663e84623eb0e3a260af252fef441924d4
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 930a2cf6fff820c2461b42dd79d71d9379343013
workflow graph qiime2 importing data

Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step1-import-demux-paired.cwl

Branch/Commit ID: ef08cb00bd55b4c712645d171dbc691e01ed6165

Packed ID: qiime2-01-import-data-paired.cwl
workflow graph mirna_profiling.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/mirnaseq/mirna_profiling.cwl

Branch/Commit ID: 14558b578bad217685ae3c4807ead2a4392d0319
workflow graph pcawg_minibam_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: e9f212b6e4c5b8ea691d9112c57201f498cf5dfe
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 708fd971bd3abe4d367e501583b964bc4c0311b9
workflow graph bgzip and index VCF

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: varscan/bgzip_and_index.cwl

Branch/Commit ID: 8c5ae3dbabfe73e0a577b91b25ef5b0b32f388cb