Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Bisulfite QC tools

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bisulfite_qc.cwl

Branch/Commit ID: master
workflow graph per_cluster_workflow.cwl

https://github.com/FarahZKhan/scalability-reproducibility-chapter.git

Path: CWL/per_cluster_workflow.cwl

Branch/Commit ID: ProvCaptureDemo
workflow graph main-somatic.cwl

https://github.com/bcbio/test_bcbio_cwl.git

Path: somatic/somatic-workflow/main-somatic.cwl

Branch/Commit ID: master
workflow graph maw.cwl

multiple mzml files, all with the same condition

https://github.com/zmahnoor14/MAW.git

Path: cwl/maw.cwl

Branch/Commit ID: a8b2df3f3918ee400b236c49b34092959293b41b
workflow graph mixed_library_metrics.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/mixed_library_metrics.cwl

Branch/Commit ID: 1.0
workflow graph htseq_workflow.cwl

https://github.com/NCI-GDC/htseq-cwl.git

Path: workflows/subworkflows/htseq_workflow.cwl

Branch/Commit ID: master
workflow graph birds.cwl

https://github.com/eosc-lofar/presto-cwl.git

Path: birds.cwl

Branch/Commit ID: visualise
workflow graph Add snv and indel bam-readcount files to a vcf

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/vcf_readcount_annotator.cwl

Branch/Commit ID: low-vaf
workflow graph align-test-files-pack.cwl#main

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/align-test-files-pack.cwl

Branch/Commit ID: master

Packed ID: main
workflow graph find_hotspots_in_normals.cwl

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/mskcc/access-pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master