Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph trim-rnaseq-se-dutp.cwl

Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/trim-rnaseq-se-dutp.cwl

Branch/Commit ID: 2d54a7edc45b7dfbee41ecef200a634fd0cd5e97
workflow graph Bisulfite alignment and QC

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/bisulfite.cwl

Branch/Commit ID: 24e5290aec441665c6976ee3ee8ae3574c49c6b5
workflow graph directory.cwl

Inspect provided directory and return filenames. Generate a new directory and return it (including content).

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/directory.cwl

Branch/Commit ID: a67c898958f6affc8cb9de05fe87c9228a4fc63e
workflow graph Immunotherapy Workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/immuno.cwl

Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775
workflow graph mrna-prot-comparison.cwl

https://github.com/PNNL-CompBio/decomprolute.git

Path: metrics/mrna-prot/mrna-prot-comparison.cwl

Branch/Commit ID: 010b416623cd217a6300f96cc0623bc8fde690d9
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: 31a179d7a2f2ac86bfd7fcc4dc79832c3739ae76
workflow graph exome alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/exome.cwl

Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f
workflow graph canine_collect_somatic_metrics_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_collect_somatic_metrics_module.cwl

Branch/Commit ID: 462aaebbd442e84ea101b45b716df0174b88512e
workflow graph collect_bam_stats_workflow.cwl

https://github.com/rdocking/sgseq_cwl.git

Path: cwl/collect_bam_stats_workflow.cwl

Branch/Commit ID: 1b96beda80640ca21c2f4fcd317f890be7fa9c5e
workflow graph revsort-single-no-docker.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/Duke-GCB/calrissian.git

Path: input-data/revsort-single-no-docker.cwl

Branch/Commit ID: d0221cf13e13c365262e1a2d8d99ff72527b2a78