Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Run tRNAScan	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	spurious_annot pass2	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	spurious_annot	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
	Execute CRISPR	https://github.com/ncbi/pgap.git Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e