Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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default_with_falsey_value.cwl
reproduces https://github.com/DataBiosphere/toil/issues/3141 |
https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/default_with_falsey_value.cwl Branch/Commit ID: b60a42e3cc417c5b75b88fd7c6681abcc7ff5b89 |
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kfdrc_qc_wf.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: workflows/kfdrc_qc_wf.cwl Branch/Commit ID: 43d7b79b07b8948c879b9bf97aeec461c79492d2 |
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optional_src_mandatory_sink.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/optional_src_mandatory_sink.cwl Branch/Commit ID: 20f01e04328537714e57d136e242d3e7a9d44266 |
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NonSpliced RNAseq workflow
Workflow for NonSpliced RNAseq data alignment with multiple aligners. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (trimming) - bowtie2 (read mapping) - sam_to_sorted-bam - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_NonSpliced.cwl Branch/Commit ID: master |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_orf_hmms.cwl Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3 |
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MoveData-workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: MoveData-workflow.cwl Branch/Commit ID: 3aabbb0f6635bb9354ad52f616ab7cfc61848eb6 |
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assembly-wf--v.5-cond.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/assembly-wf--v.5-cond.cwl Branch/Commit ID: fff6fa392370b56e1fe7c374167ba73df3018775 |
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bacterial_kmer
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https://github.com/ncbi/pgap.git
Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
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Per-chromosome pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 767e3dc7448da5bc44e4817c4161f6e4530032e2 |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: f390475a4e0898d4933f0a28dae278aa35803eb1 |
