Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 9c57dba558a4e04a1884eae1df8431dcaccafc1e |
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Filter Protein Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: a3affd1b9e3e16f0644a25fee1a7b87b99df57b0 |
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maf2vcf_gz_workflow.cwl
Workflow to convert a maf file into a vcf.gz with .tbi index |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/maf2vcf_gz_workflow.cwl Branch/Commit ID: 5cad957fec135aa55ca8d588372db0557ca1cad5 |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
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revsort_step_bad_schema.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/revsort_step_bad_schema.cwl Branch/Commit ID: 912282ed4d528aa33c33b8a8d99e6992b6ded760 |
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bam_readcount workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-noscreen-fasta.workflow.cwl Branch/Commit ID: d9cf22cd615542c94f7974e8bce4cf29b24d985f |
