Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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func_ann_and_post_processing-subwf.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/assembly/func_ann_and_post_processing-subwf.cwl Branch/Commit ID: fff6fa392370b56e1fe7c374167ba73df3018775 |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3 |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: cc7fb3e5c534036638921878527a610fd5e1c2ab |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315 |
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Indices builder from GBOL RDF (TTL)
Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_indexbuilder.cwl Branch/Commit ID: master |
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echo-wf-default.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/echo-wf-default.cwl Branch/Commit ID: e515226f8ac0f7985cd94dae4a301150adae3050 |
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workflow_mock_ngtax.cwl
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https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_mock_ngtax.cwl Branch/Commit ID: master |
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scatter-valuefrom-wf3.cwl#main
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/scatter-valuefrom-wf3.cwl Branch/Commit ID: b60a42e3cc417c5b75b88fd7c6681abcc7ff5b89 Packed ID: main |
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chunking-subwf-hmmsearch.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/chunking-subwf-hmmsearch.cwl Branch/Commit ID: fff6fa392370b56e1fe7c374167ba73df3018775 |
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chunking-subwf-IPS.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/chunking-subwf-IPS.cwl Branch/Commit ID: fff6fa392370b56e1fe7c374167ba73df3018775 |
